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Metabolic & Lysosomal

Pompe Disease Clinical Trials and Treatments

Also called Pompe's disease, glycogen storage disease type II, acid maltase deficiency

Pompe disease is an autosomal recessive lysosomal storage disorder caused by deficiency of acid alpha-glucosidase (GAA), an enzyme essential for breaking down glycogen. Without adequate enzyme activity, glycogen accumulates excessively in lysosomes throughout the body, with most severe impact on skeletal muscle, cardiac muscle, and the diaphragm.

View 29 active trialsMatch me to a trial

About Pompe Disease

Pompe disease is an autosomal recessive lysosomal storage disorder caused by deficiency of acid alpha-glucosidase (GAA), an enzyme essential for breaking down glycogen. Without adequate enzyme activity, glycogen accumulates excessively in lysosomes throughout the body, with most severe impact on skeletal muscle, cardiac muscle, and the diaphragm.

The infantile-onset form (before age 12 months) is the most severe, characterized by hypotonia, feeding difficulties, and progressive cardiomyopathy that can be fatal by age 2 without treatment. Late-onset Pompe disease, presenting after age 1 year, has slower progression but still causes progressive proximal muscle weakness with eventual respiratory complications.

Since the introduction of enzyme replacement therapy (alglucosidase alfa), outcomes have improved dramatically, particularly when treatment is initiated early. Even patients diagnosed later can benefit from enzyme replacement, which can slow or stabilize disease progression.

Common Symptoms of Pompe Disease

Recognizing the signs of Pompe Disease early can lead to faster diagnosis and better outcomes. Symptoms may vary in severity from person to person. If you or a loved one are experiencing any of the following, consider speaking with a specialist.

  • Progressive muscle weakness and loss of tone
  • Heart enlargement (cardiomegaly) in infants
  • Breathing difficulties, especially when lying flat
  • Hypotonia and feeding difficulties in infants
  • Exercise intolerance and fatigue in older children
  • Respiratory muscle weakness in late-onset disease

Who Pompe Disease Affects

Infantile-onset form (before age 1) is most severe and rapidly progressive. Late-onset form typically presents in childhood to adulthood with limb-girdle muscle weakness. Affects males and females equally across all ethnicities.

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FDA-Approved Treatments for Pompe Disease

There are currently 3 FDA-approved medications for Pompe Disease. These therapies represent the current standard of care and may be used alongside or compared against investigational treatments in active clinical trials.

avalglucosidase alfa
Sanofi Genzyme
Official site
alglucosidase alfa
Sanofi Genzyme
Official site
cipaglucosidase alfa + miglustat
Amicus Therapeutics (part of BioMarin since April 2026)
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Source: openFDA drug labeling data. This list may not include all treatments. Always consult your doctor.

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Help Paying for Pompe Disease Treatment

Charity funds and drugmaker programs for Pompe Disease, checked at the source. Pick your insurance to see what fits.

Your insurance
Charity funds
  • From a charity · TotalAssist (formerly PAN Foundation)
    Pompe Disease fund
    Open

    Pays for: Out-of-pocket costs for approved medications, up to $9,500 per year. Requires health insurance (any kind).

  • From a charity · Muscular Dystrophy Association
    MDA Durable Medical Equipment (DME) Grant Program fund
    Apply directly

    Pays for: Medical equipment (wheelchairs, lifts, canes and other DME), up to $1,000 per year.

    The foundation says: “Status not shown on page”
  • From a charity · The Assistance Fund
    Pompe Disease fund
    Waitlist

    Pays for: Copays, coinsurance, deductibles and other health-related expenses.

    The foundation says: “WAITLIST — Accepting Waitlist Patients. TAF is currently accepting requests to join the enrollment waitlist for this program. Waitlists a…”
Status as each foundation showed it on September 28, 2026.

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Side Effect Explorer

Real-world side effect reports from the FDA Adverse Event Reporting System (FAERS). Includes both FDA-approved drugs and investigational therapies from active clinical trials. Click any drug to see what patients reported.

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Genetic Testing

Genetic testing can confirm a diagnosis, guide treatment decisions, and identify family members who may be at risk.

The GAA gene page lists every condition Orphanet links to the gene and the open trials that name it.

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Trusted Pompe Disease Resources

Reputable organizations and medical references for learning more about Pompe Disease, including disease registries, foundation resources, and clinical guidelines.

Active Clinical Trials for Pompe Disease

Use this Pompe Disease clinical trial finder to see the 22 studies recruiting patients and 5 opening soon in the United States and worldwide, with eligibility criteria in plain English. These studies play a critical role in advancing care for metabolic & lysosomal conditions and may offer access to treatments not yet widely available. Each trial below is sourced directly from ClinicalTrials.gov, with eligibility criteria translated into plain English to help patients and caregivers evaluate whether a study may be a fit.

TrialsSite mapPipeline timeline

Note: Trial recruitment statuses on ClinicalTrials.gov may not immediately reflect recent FDA decisions, sponsor announcements, or enrollment changes. Always confirm a trial's current status directly with the study coordinator before making plans.

29 active trials worldwide
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RECRUITINGRecently updatedNCT07834320

Pompe Disease RWE Long-term Monitoring Program

Sponsor: National Taiwan University Hospital

Evaluate short- and long-term biomarker, motor function, respiratory function and safety with avalglucosidase alfa in IOPD and LOPD patients who switched from other ERT.

Ages not specified1 location
Started Oct 2023Updated 1 week agoEst. Oct 2036 (~10 years)
NOT YET RECRUITINGPHASE1Recently updatedNCT07787650

A Study of S-606001 as Monotherapy in Participants With Late-onset Pompe Disease (LOPD)

Intervention: S-606001

Sponsor: Shionogi

The primary purpose of this study is to evaluate the safety and tolerability profile of S-606001 in participants with LOPD.

Ages 18 Years+
Started Sep 2026Updated 1 month agoEst. Oct 2028 (~2y 1m)
RECRUITINGPHASE1Recently updatedNCT07354724

A Study to Evaluate the Safety, Pharmacokinetics, and Pharmacodynamics of DNL952 in Adult Participants With Late-Onset Pompe Disease

Intervention: DNL952

Sponsor: Denali Therapeutics Inc.

This is a Phase 1, multicenter, open-label study to evaluate the safety, tolerability, pharmacokinetics (PK), and pharmacodynamics (PD) of DNL952 in adult participants with late-onset Pompe disease. The principal aim of this study is to obtain safety and tolerability data across ...

Ages 18 Years – 75 Years4 locations
Started May 2026Updated 1 month agoEst. Aug 2028 (~1y 11m)
NOT YET RECRUITINGPHASE2Recently updatedNCT07750990

An Extension Study of S-606001 in Participants With Late-onset Pompe Disease (LOPD)

Intervention: S-606001, ERT

Sponsor: Shionogi

The primary purpose of this study is to evaluate the long-term safety and tolerability profile of S-606001 in participants with LOPD.

Ages 18 Years+
Started Aug 2026Updated 1 month agoEst. Aug 2028 (~1y 11m)
RECRUITINGPHASE1, PHASE2Recently updatedNCT07282847

A Study to Evaluate Safety, Tolerability, and Efficacy of AB-1009 Gene Therapy (GAA Gene) in Adult Participants With Late-Onset Pompe Disease (PROGRESS-GT LOPD)

Intervention: AB-1009 (GAA Gene)

Sponsor: AskBio Inc · Bayer

This is a single-arm, open-label, dose-escalation study to evaluate the safety, tolerability and efficacy of a single intravenous infusion of AB-1009 in adult participants with late-onset Pompe disease (LOPD).

Ages 18 Years – 65 Years9 locations
Started Apr 2026Updated 2 months agoEst. Sep 2028 (~2 years)
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Active trial locations77 cities in the US
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Trial Pipeline

Jan 2021 to Sep 2031
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Data from ClinicalTrials.gov, U.S. National Library of Medicine.
Always talk to your doctor before considering a clinical trial.

Patient Communities

Connect with other Pompe Disease patients, caregivers, and advocacy groups across Facebook groups, Reddit communities, and YouTube channels. These patient communities offer peer support, shared experiences, caregiver resources, and real-time discussion about Pompe Disease treatments, clinical trial participation, and day-to-day disease management.

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Related Metabolic & Lysosomal Conditions

Other rare diseases in the metabolic & lysosomal category. Patients with Pompe Disease may find relevant research, shared treatment pathways, or overlapping clinical trials among these related conditions.

Companies Developing Pompe Disease Treatments

8 pharmaceutical companies have Pompe Disease in their rare disease portfolio

Frequently Asked Questions About Pompe Disease